University of Illinois Urbana-Champaign
Hongqiang Ma's website
Publications
Redox Regulation of RAD51 Cys319 and Homologous Recombination by Peroxiredoxin 1
Skoko JJ, Cao J, Gaboriau D, Attar M, Asan A, Hong L, Paulsen CE, [Ma H], Liu Y, Wu H, Furdui CM, Manevich Y, Morrison CG, Brown ET, Normolle DP, Carroll K, Neumann C
Redox Biology, 55, 102443, 2022
Ultrastructural visualization of chromatin in cancer pathogenesis using a simple small-molecule fluorescent probe
Xu J, Sun X, Kim K, Brand RM, Hartman D, [Ma H], Brand RE, Bai M, Liu Y
Science Advances, 8: eabm8293, 2022
Robust emitter localization with enhanced harmonic analysis
Ma H, Liu Y
Optics Letters, 46(23), 5798-5801, 2021
Enhanced super-resolution microscopy by extreme value based emitter recovery
Ma H, Jiang W, Xu J, Liu Y
Scientific Reports, 11, 20417, 2021
Embedded nanometer position tracking based on enhanced phasor analysis
Ma H, Liu Y
Optics Letters, 46, 3825-3828, 2021
Super-resolution imaging reveals the evolution of higher-order chromatin folding in early carcinogenesis
[Xu J#, Ma HQ#], Ma HB, Jiang W, Duan M, Mela CA, Zhao S, Gao C, Hahm E-R, Lardo SM, Troy K, Sun M, Pai R, Stolz DB, Zhang L, Singh S, Brand RE, Hartman DJ, Hu J, Hainer SJ, Liu Y
Nature Communications, 11: 1899, 2020
WindSTORM: Robust online image processing for high-throughput nanoscopy
Ma H, Xu J, Liu Y
Science Advances, 5: eaaw0683, 2019
Concentric organization of A- and B-type lamins predicts their distinct roles in the spatial organization and stability of the nuclear lamina
[Nmezi B#, Xu J#, Fu R#], Armiger T, Bey G, Schneider J, [Ma H], Tu Y, Chen N, Young S, [Dahl K*, Liu Y*, Padiath Q*]
Proceedings of the National Academy of Sciences of the USA, 116(10): 4307-4315, 2019Super-resolution imaging of higher-order chromatin structures at different epigenomic states in single mammalian cells
Xu J, [Ma H], Jin J, Uttam S, Fu R, Huang Y, Liu Y
Cell Reports, 24: 873-882, 2018
Optimized Stochastic Optical Reconstruction Microscopy for Imaging Chromatin Structure in Pathological Tissue
Xu J, [Ma H], Liu Y
Current Protocols in Cytometry, 94(1), e78, 2020
Super-resolution localization microscopy: Toward high throughput, high quality, and low cost
Ma H, Liu Y
APL Photonics, 5, 060902, 2020
SIRT6 facilitates directional telomere movement upon oxidative damage
Gao Y, Tan J, Jin J, [Ma H], Chen X, Leger B, Xu J, Spagnol S.T., Dahl K.N., Levine, A.S., Liu Y, Lan L
Scientific Reports, 8: 5401, 2018A simple marker-assisted three-dimensional nanometer drift correction method for super-resolution microscopy
Ma H, Xu J, Jin J, Huang Y, Liu Y
Biophysical Journal, 112: 2196-2208, 2017
A simple and cost-effective setup for super-resolution localization microscopy
Ma H, Fu R. Xu J, Liu Y
Scientific Reports, 7(1): 1542, 2017
SSRP1 cooperates with PARP and XRCC1, facilitating single strand break repair through chromatin priming
Gao Y, Li C, Wei L, Teng Y, Nakajima S, Chen X, Xu J, Legar B, [Ma H], Spagnol ST, Wan Y, Dahl KN, Liu Y, Levine A, Lan L
Cancer Research, 77: 2674-2685, 2017
Stochastic optical reconstruction microscopy (STORM)
Xu J, [Ma H], Liu Y
Current Protocols in Cytometry, 81: 12.46.1–12.46.27, 2017
Fast and precise 3D fluorophore localization based on gradient fitting
Ma H, Xu J, Jin J, Gao Y, Lan L, Liu Y
Scientific Reports, 5: 14335, 2015Early Publications
2010-2014
- Ma H, Kawai H, Toda E, Zeng S, Huang ZL. Localization-based super-resolution microscopy with an sCMOS camera part III: camera embedded data processing significantly reduces the challenges of massive data handling, Optics Letters. 2013 Jun 1;38(11):1769-71.
- Ma H, Long F, Zeng S, Huang ZL. Fast and precise algorithm based on maximum radial symmetry for single molecule localization. , Optics Letters. 2012 Jul 1;37(13):2481-3.
- Huang ZL, Zhu H, Long F, Ma H, Qin L, Liu Y, Ding J, Zhang Z, Luo Q, Zeng S. Localization-based super-resolution microscopy with an sCMOS camera. , Optics Express. 2011 Sep 26;19(20):19156-68.