University of Illinois Urbana-Champaign
Gradient fitting algorithm is for high-speed 3D localization of fluorescent emitters in astigmatism-based microscopy (e.g., STORM and PALM).
Programming Language: MATLAB
Publication: The algorithm of this code has been published in the following paper: Ma H, Xu J, Jin J, Gao Y, Lan L, Liu Y. Fast and precise 3D fluorophore localization based on gradient fitting. Scientific Reports, 5: 14335, 2015.
Source Code: Source code is available on our github depository.
WindSTORM is a high-speed high-density single-molecule localization algorithm based on linear deconvolution for super-resolution microscopy (e.g., STORM and PALM).
Programming Language: MATLAB
Publication: The algorithm of this code has been published in the following paper: Ma H, Xu J, Liu Y. WindSTORM: Robust online image processing for high-throughput nanoscopy. Science Advances, eaaw0683, 2019.
Source Code: The source code and testing dataset are available on our shared drive (password: Biophotonics).
EVER stands for extreme-value based emitter recovery, which is used to correct for heterogeneous background in the raw data of single moelcule localization microscopy (e.g., STORM and PALM).
Programming Language: ImageJ Plugin (Java)
Publication: The algorithm of this code has been described in detail in the following two publications:
1. Ma H, Xu J, Liu Y. WindSTORM: Robust online image processing for high-throughput nanoscopy.
Science Advances, eaaw0683, 2019.
Source Code: The source code is available on our github depository.